PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6BL_3F20B009E.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 166aa    MW: 18944.5 Da    PI: 9.086
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6BL_3F20B009E.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1401.3e-1263143191
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                            +fYn Y+ e GF +r  ks+ + + +   +++ vC ++gk+  e+++         + +++C a +++ + +d+ w+++k +  HnH+
  Traes_6BL_3F20B009E.1  63 DFYNLYSWEKGFGIRYGKSRLNVERT-KCMQEIVCGCSGKAGVENTR---------SCHCECPALIRLLRAEDNGWYIAKHRDTHNHS 140
                            6*****************99995544.67889*******99887555.........999***************************** PP

                   FAR1  89 lap 91 
                            l+p
  Traes_6BL_3F20B009E.1 141 LSP 143
                            986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.6E-963143IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MNPRAPGWNK RLRIGAAAPS RPPCPNRISA FEKAVRRFAE NPTENVITPV IGTTFDSVDQ  60
AYDFYNLYSW EKGFGIRYGK SRLNVERTKC MQEIVCGCSG KAGVENTRSC HCECPALIRL  120
LRAEDNGWYI AKHRDTHNHS LSPNFGETIH WPSHKHIDVY IRDLVK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014753620.11e-69PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
TrEMBLW5GJ151e-124W5GJ15_WHEAT; Uncharacterized protein
STRINGBRADI1G32950.13e-69(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6191991
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.13e-12FAR1-related sequence 7
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]